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4 Amazing Homemade Gluten Free Protein Bagels

Oh my gosh, I know the morning struggle! You’re trying to hit those protein goals after a workout, you need something fast, but everything gluten-free seems to taste like cardboard or just totally fall apart when you toast it. I spent *ages* trying every store-bought substitute out there—disappointing, every single time. Seriously, finding a satisfying, high-protein bread replacement that actually tastes like a real baked good felt impossible!

But stop stressing right now, because I cracked the code. This recipe for Homemade Gluten Free Protein Bagels is a game-changer, trust me. They come together in minutes, use basic pantry staples, and the texture is legitimately chewy and perfect—not crumbly, not gritty. If you’ve given up on bagels because of dietary needs, get ready to cheer. These are simple, high-protein, and unbelievably quick to whip up!

Why These Homemade Gluten Free Protein Bagels Are Your New Go-To Breakfast

I love how these save me when I’m rushing out the door but refuse to skip my morning fuel. Honestly, they are ridiculously straightforward. I mean, you mix, you shape, you bake. That’s it!

You don’t need any fancy yeast, and you certainly don’t need gluten! They fly off the rack for me, and I have a feeling they will for you too, especially if you need a solid foundation for your morning meal. For more quick breakfast ideas, you might want to check out my recipe for quick oat bread, but these are way higher protein!

Here’s why I reach for this recipe almost every week:

  • They pack a serious punch—we’re talking about 20 grams of protein per bagel!
  • Naturally gluten-free, so nobody in the house feels left out.
  • Prep time is seriously only about 15 minutes. You can make these faster than waiting in line at the drive-thru.
  • There are only seven core ingredients, which keeps things easy and predictable.

Essential Ingredients for Perfect Homemade Gluten Free Protein Bagels

Getting the right parts is key here—it’s so simple, but you can’t mess around with the specific versions of the protein and yogurt. You’ll need almond flour for body, baking powder and salt, one big egg, a little apple cider vinegar for a touch of acid, and, of course, your everything bagel seasoning if you’re feeling zesty!

Make sure you’re using plain, thick Greek yogurt. That thickness is what holds the dough together instead of regular runny yogurt, which would make a puddle!

Ingredient Notes and Substitutions for Homemade Gluten Free Protein Bagels

Seriously, go for a high-quality whey protein isolate; the cheap stuff can sometimes be gritty, and we want smooth protein bagels! And please, stick to that full-fat Greek yogurt—it’s essential for moisture. If you were truly desperate and out of protein powder, you could try using a cup of fine oat flour, but whisper-quietly, the texture really won’t be the same, okay? Just trust me on the whey!

Step-by-Step Instructions for Baking Homemade Gluten Free Protein Bagels

Okay, time to get our hands dirty! Baking these Homemade Gluten Free Protein Bagels is surprisingly straightforward, but timing is everything, especially getting that oven hot right away. Don’t let that batter sit around once it’s mixed; we’re relying on baking powder, not yeast, for the lift!

Preparing the Dry and Wet Mixes for Your Homemade Gluten Free Protein Bagels

First things first: get that oven cranking to 350°F (175°C) and line a sheet pan. Next, we separate! Whisk all your dry stuff—almond flour, protein powder, baking powder, and salt—in one bowl until they are totally married. In a separate, smaller bowl, you’ll gently mix your egg, Greek yogurt, and that splash of apple cider vinegar until it’s smooth. Keep them separate for now!

Forming and Seasoning the Homemade Gluten Free Protein Bagels Dough

Now, pour the wet into the dry and mix it up. It’s going to feel stiff, which is good! If it’s wildly sticky, add just a teaspoon of almond flour at a time until you can handle it without getting glue all over your fingers. Divide that dough into four equal chunks. Roll each piece into a rope shape and then gently loop it around to form a bagel, making sure you pinch those ends together really firmly. If you’re using the topping, brush the tops with a bit of water—it helps the seasoning stick—and sprinkle that seasoning on now. Don’t forget to check out these tips for homemade guacamole while you wait for the oven to heat fully!

Close-up of four Homemade Gluten Free Protein Bagels topped with everything bagel seasoning on a white plate.

Baking and Cooling Your Homemade Gluten Free Protein Bagels

Pop them into that hot oven for about 20 to 25 minutes. You are watching for them to feel firm to the touch and look just lightly golden brown on top. This is crucial: when they come out, you have to let your Homemade Gluten Free Protein Bagels cool completely on a wire rack. If you slice them warm, they will definitely crumble on you. Patience pays off for structure!

Two golden-brown Homemade Gluten Free Protein Bagels topped with everything bagel seasoning served on a white plate.

Tips for Success When Making Homemade Gluten Free Protein Bagels

Listen, gluten-free baking is tricky business, even for those of us with a seasoned kitchen! With protein powder doughs, the biggest mistake you can make is overworking it. Once it comes together into a cohesive ball, stop mixing immediately. Seriously, stop!

Here are my three golden rules for perfect Homemade Gluten Free Protein Bagels every time. First, weigh your almond flour if you can—scooping it loosely versus packing it in makes a huge difference in the final density.

Second, make sure your Greek yogurt is perfectly chilled. The contrast between the cool yogurt and the dry ingredients helps create a better initial structure before baking. If you want them to be truly excellent, check out my guide on getting that perfect sear—sometimes pastry techniques cross over!

And finally, when shaping, be gentle but assertive about pinching those ends. If the seal isn’t tight, they tend to open up into weird C-shapes instead of beautiful rings while they bake. A little love goes a long way!

Storage and Reheating Homemade Gluten Free Protein Bagels

Since these are so fresh, they don’t have all the preservatives found in the grocery store stuff, which is great for ingredients, but less great for long-term shelf stability! The rule of thumb is they are best enjoyed within two days of baking. If you can’t devour four bagels that fast—which happens in my house—you absolutely need to freeze them.

When you wrap them well (airtight containers work best for freezing), they last beautifully for about a month. Don’t try to reheat a frozen bagel in the microwave, though! It gets hot, sure, but it turns spongy fast. I always pull mine out the night before and let them thaw on the counter. Then, a quick three minutes in the toaster oven brings back the perfect bagel bite!

Serving Suggestions for Your Homemade Gluten Free Protein Bagels

Now that you have these beautiful, sturdy rings of high-protein goodness, what are you going to put on them? Since the bagel itself is loaded, I love keeping the toppings clean and savory. For a healthy fat punch, you can’t beat half an avocado smashed right on top with a little red pepper flake—it’s so simple!

If you want a classic deli feel, some smoked salmon and a schmear of light cream cheese is amazing. Or, for a real protein boost that keeps you full till lunch, grab your favorite nut butter. If you happen to be looking for other savory ideas using healthy fats, my avocado tuna salad recipe would be incredible dolloped on one of these!

Close-up of a golden brown Homemade Gluten Free Protein Bagel topped with sesame and black seeds on a white plate.

Frequently Asked Questions About Homemade Gluten Free Protein Bagels

It’s totally normal to have questions when trying a new protein recipe! I always save my biggest questions for an FAQ section, just like this. People often ask me about the texture or if they can swap out ingredients when they are trying to make strictly low carb bagels.

Here are the things I hear most often about these gluten free bagels. If you happen to be trying a completely different meal later though, like my keto taco casserole, feel free to leave a comment below!

Can I make these Homemade Gluten Free Protein Bagels without whey protein?

This is a tough one. I haven’t tested it extensively, but if you have an allergy or preference, you might try using a finely ground lupin or soy protein isolate instead, but be warned: you will absolutely need to adjust your liquid content. Whey absorbs liquid differently than plant proteins do, so you’ll likely need less yogurt or need to add more almond flour until the dough firms up.

How do I prevent my Homemade Gluten Free Protein Bagels from being too dense?

Density is the enemy of the perfect bagel! It all comes down to the leavening and mixing. Make absolutely sure your baking powder is fresh—if it’s old, it won’t give you that necessary lift. Also, remember what I said about mixing: stop as soon as the dry and wet ingredients are incorporated. Overmixing develops whatever structure the protein has, making them hard bricks instead of satisfyingly chewy low carb bagels.

Estimated Nutritional Profile of Homemade Gluten Free Protein Bagels

I always like to give you guys a general idea of what you are putting into your body when you make these bagels. Remember, this is just an estimate based on using standard, unflavored whey isolate because we all buy slightly different brands, right? So, treat these numbers as a great starting point!

  • Calories: Approximately 250 per bagel
  • Protein Power: A whopping 20 grams!
  • Carbohydrates: Around 12 grams (with 3 grams of fiber!)
  • Total Fat: About 14 grams

Because these are so packed with protein and rely on almond flour instead of white flour, they are fantastic for keeping you full all morning long. If you’re tracking your water intake alongside your macros, be sure to check out this helpful guide on how to drink 8 glasses of water each day!

Share Your Homemade Gluten Free Protein Bagels Creations

I absolutely love seeing your kitchen experiments! Once you’ve made your batch of Homemade Gluten Free Protein Bagels, please come back and tell me what you thought. Don’t forget to leave a star rating right below this section—it helps other bakers know they are in good hands!

If you snapped a picture of your perfect rings, share them on social media and tag me! There’s nothing better than seeing these healthy breakfast options out in the world. Enjoy!

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Two golden brown Homemade Gluten Free Protein Bagels topped with everything bagel seasoning on a white plate.

Homemade Gluten Free Protein Bagels


  • Author: memorecipes.com
  • Total Time: 40 min
  • Yield: 4 servings 1x
  • Diet: Gluten Free

Description

A recipe for making simple, high-protein bagels that are naturally gluten-free.


Ingredients

Scale
  • 1 cup almond flour
  • 1/2 cup whey protein isolate (unflavored or vanilla)
  • 2 teaspoons baking powder
  • 1/2 teaspoon salt
  • 1 large egg
  • 1/2 cup plain Greek yogurt
  • 1 tablespoon apple cider vinegar
  • 1 tablespoon everything bagel seasoning (optional)

Instructions

  1. Preheat your oven to 350°F (175°C). Line a baking sheet with parchment paper.
  2. In a medium bowl, whisk together the almond flour, protein powder, baking powder, and salt.
  3. In a separate small bowl, mix the egg, Greek yogurt, and apple cider vinegar until combined.
  4. Add the wet ingredients to the dry ingredients. Mix until a stiff dough forms. If the dough is too sticky, add a small amount of extra almond flour, one teaspoon at a time.
  5. Divide the dough into four equal portions. Roll each portion into a rope and form it into a bagel shape, pinching the ends together.
  6. Place the bagels on the prepared baking sheet. Brush the tops lightly with water and sprinkle with everything bagel seasoning, if using.
  7. Bake for 20 to 25 minutes, or until the bagels are firm and lightly golden brown.
  8. Let the bagels cool completely on a wire rack before slicing.

Notes

  • Use a high-quality whey protein isolate for the best texture.
  • Greek yogurt adds moisture; do not substitute with regular yogurt.
  • These bagels are best eaten within two days or frozen for later use.
  • Prep Time: 15 min
  • Cook Time: 25 min
  • Category: Breakfast
  • Method: Baking
  • Cuisine: American

Nutrition

  • Serving Size: 1 bagel
  • Calories: 250
  • Sugar: 2
  • Sodium: 350
  • Fat: 14
  • Saturated Fat: 3
  • Unsaturated Fat: 11
  • Trans Fat: 0
  • Carbohydrates: 12
  • Fiber: 3
  • Protein: 20
  • Cholesterol: 75

Keywords: gluten free bagels, protein bagels, almond flour recipe, high protein breakfast, low carb bagels

Recipe rating